Index

_

__init__() (iCLIP.utils.TranscriptCoordInterconverter method)

B

bin_counts() (in module iCLIP.meta)

boot_ci() (in module iCLIP.random) bootstrap() (in module iCLIP.random)

C

calcAverageDistance() (in module iCLIP.distance) compress_matrix() (in module iCLIP.meta) corr_profile() (in module iCLIP.distance)

count_intervals() (in module iCLIP.counting) count_ratio() (in module iCLIP.random) count_transcript() (in module iCLIP.counting)

F

fdr() (in module iCLIP.clusters)

find_all_matches() (in module iCLIP.kmers) findMinDistance() (in module iCLIP.distance)

G

genome2transcript() (iCLIP.utils.TranscriptCoordInterconverter method) genome_interval2transcript() (iCLIP.utils.TranscriptCoordInterconverter method) genome_intervals (iCLIP.utils.TranscriptCoordInterconverter attribute)

get_binding_matrix() (in module iCLIP.meta) get_crosslink_fdr_by_randomisation() (in module iCLIP.clusters) get_window() (in module iCLIP.meta) getter() (in module iCLIP.getters)

L

length (iCLIP.utils.TranscriptCoordInterconverter attribute)

M

make_getter() (in module iCLIP.counting) (in module iCLIP.getters)

meta_gene() (in module iCLIP.meta)

O

offset (iCLIP.utils.TranscriptCoordInterconverter attribute)

P

pentamer_enrichment() (in module iCLIP.kmers) pentamer_frequency() (in module iCLIP.kmers)

Ph() (in module iCLIP.clusters) processing_index() (in module iCLIP.meta)

Q

quantile_row_norm() (in module iCLIP.meta)

R

rand_apply() (in module iCLIP.utils)

randomiseSites() (in module iCLIP.utils) ratio_and_ci() (in module iCLIP.random)

S

spread() (in module iCLIP.utils)

strand (iCLIP.utils.TranscriptCoordInterconverter attribute) sum_row_norm() (in module iCLIP.meta)

T

transcript2genome() (iCLIP.utils.TranscriptCoordInterconverter method) transcript_id (iCLIP.utils.TranscriptCoordInterconverter attribute)

transcript_interval2genome_intervals() (iCLIP.utils.TranscriptCoordInterconverter method) transcript_intervals (iCLIP.utils.TranscriptCoordInterconverter attribute) TranscriptCoordInterconverter (class in iCLIP.utils)