iCLIP.getters.getter¶

iCLIP.getters.getter(contig, start=0, end=None, strand='.', dtype='uint16')¶

Get the profile of crosslinks across a genomic region, returning the number of crosslinks on each base.

This stub defines the abstract interface for a getter function. Getters are made by calling the make_getter() function. The returned function will have the interface specified here.

Parameters:	contig (str) – start (int, optional) – end (int or None, optional) – If None specified then profile will be returned from 0 to end of contig. strand (['.','+','-'], optional) – strand to return counts from. If `.` then data from both strands is returned. dtype (str) – dtype to use for storing data. Usually a type of unsigned int. Larger size ints are less likely to overflow, but take more memeory.
Returns:	Profile of crosslinks. Index is the genomic base, value is the count. Series is sparse, that is bases with no crosslinks are excluded from the index.
Return type:	pandas.Series